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Header image: Laura Kloepper, Ph.D.

discussion

Graph of life platform

For past few months I have been exploring the idea of a platform built around a 'Graph of Life' — where users could query traits (e.g., images, sounds), access phylogenetic data,...

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discussion

How do you tackle the anomalous data during the COVID period when doing analysis?

COVID, as devastating as it for humans, significantly reduced anthropogenic pressures in all ecological systems since they were confined to their homes. My question is as the...

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To clarify, are you talking about a model that carries out automated detection of vocalizations? or a model that detects specific patterns of behavior/movement? I would suspect that the former is not something that may be impacted while training as the fundamental vocalizations/input is not going to change drastically (although see Derryberry et al., where they show variation in spectral characteristics of sparrows at short distance pre and post-covid lockdowns). 

I'm specifically referring to movement of animals affected by anthropogenic factors. My question has nothing to do with vocalisations. 

Humans were essentially removed from large sections of the world during covid and that surely had some effects on wildlife movements, or at least I am assuming it did. But that would not be the regular "trend". If I try to predict the movement of a species over an area frequented by humans, that surely comes into the picture - and so does their absence. 

My question is very specific to dealing with data that has absence (or limited interference) of humans during the covid period in all habitats.

You could just throw out that data, but I think you'd be doing yourself a disservice and missing out on some interesting insights. Are you training the AI with just pre-COVID animal movement data or are you including context on anthropogenic factors as well? Not sure if you are looking at an area that has available visitor/human population data, but if you include that with animal movement data across all years it should net out in the end.

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discussion

Behavioral logging from video

Hi everyone.  I wanted to ask if anyone has found a tool that they'd recommend for logging/coding behavior from video.  I've used BORIS and do like that (and it's free...

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Hi Kyler,

Did you find anything suitable?

Best,

Melissa

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discussion

What questions would you ask an AI agent for conservation tech?

If you had access to an agent trained specifically to provide guidance on conservation technology tools + methods, what would you ask it? It sounds like a lot of folks are...

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I think a conservation tech agent would be most useful if it connects directly to existing WILDLABS resources, rather than trying to replace tools.

Ideally, it could Link questions to projects from the WILDLABS Awards or The Inventory, as well Suggest relevant forum discussions Recommend community members with similar experience. An then at the end propose technical solutions like ML models, devices, or toolkits for specific tasks 

I'm thinking of doing something like...

prompt

"How can I detect when an insect is attacking a tree using dendrometer data?"

agent

This is a time-series event detection problem. Based on previous project in WildLabs a BiLSTM neural network can be trained to recognise attack patterns by analysing the sequence of stem diameter changes before, during, and after an attack. These patterns may include sudden shrinkage or irregular oscillations caused by stress or resin production.

The agent could then link to:

  • Projects using sensors or time-series AI in behaviours or events monitoring
  • Open-source tools for LSTM-based classification
  • Forum threads or community contacts who’ve worked on similar topics, models, tools, etc

 

I agree with Jorge that an AI agent could be useful to help search the vast repository of existing discussions on WildLabs. For example: in this thread below, Maristela could have asked her question to the agent and (hopefully) been directed to the link that Akiba mentioned. 

https://wildlabs.net/discussion/advise-needed-close-focus-camera-traps

However, one issue I can see with using an AI agent instead of asking a question as currently, is if there is no record of the questions asked to the agent. A great strengths of WildLabs (and online forums) is that, because questions are recorded and visible, other members can learn from others' questions. If questions start being "hidden" in the agent's memory, other members can hardly learn from them.

Would love to collaborate on this we are curently building agents for conservation 
Kind regards
Olivier 

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Link

Unlocking AI for Nonprofits: Enroll in Nethope's New AI Skills Course for Nonprofits

A free, self-paced course series for nonprofit professionals is available through August 31.

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discussion

Issues with Audiomoth recorders

I am part of a research group using audiomoth recorders to capture bird calls. We have had some issues with the audiomoths and I was wondering if anyone else might be experiencing...

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We don't wrap all the way around, just halfway around sticking to either side of the battery case right next to, but not touching, the circuitboard. If that's not clear I can take a pic :)

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article

Alligning conservation efforts 

In most ecosystems, conservation organizations fight for specific objectives creating enemity other than working together, to feed the increasing conservation needs that are changing with the change in generational...

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This is a good target. However, there are inherent barriers for its implementation. In many instances, conservation efforts between academia, private stakeholders, and...
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discussion

A technical and conceptual curiosity... Could generative AI help us simulate or decode animal communication?

Hi everyone,I recently watched a talk by Aza Raskin where he discusses the idea of using generative models to explore communication with whales. While the conversation wasn’t...

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Hi Jorge, 

 

I think you'll find this research interesting: https://blog.google/technology/ai/dolphingemma/

Google's researchers did exactly that. They trained an LLM on dolphin vocalizations to produce continuation output, exactly as in the autoregressive papers you've mentioned, VALL-E or WaveNet.

I think they plan to test it in the field this summer and see if it will produce any interesting interaction.

Looking forward to see what they'll find :) 

Besides, two more cool organizations working in the field of language understanding of animals using AI:

https://www.projectceti.org/

https://www.earthspecies.org/

This is a really fascinating concept. I’ve been thinking about similar overlaps between AI and animal communication, especially for conservation applications. Definitely interested in seeing where this kind of work goes.

This is such a compelling direction, especially the idea of linking unsupervised vocalisation clustering to generative models for controlled playback. I haven’t seen much done with SpecGAN or AudioLDM in this space yet, but the potential is huge. Definitely curious how the field might adopt this for species beyond whales. Following this thread closely!

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discussion

Variety Hour: What do you want to see?

Alex Rood and 1 more
Hi everyone, We're settling into our new event format - we hope you're all enjoying having a regular monthly space to catch up as much as we are! I'm looking ahead at our...

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Thank you for this input @kimhendrikse @tomipiriyev @jared @BrettMargoSupplies ! I'll be following up privately to get some of these topics on the calendar :D 

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discussion

Jupyter Notebook: Aquatic Computer Vision

Dive Into Underwater Computer Vision Exploration OceanLabs Seychelles is excited to share a Jupyter notebook tailored for those intrigued by the...

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This definitely seems like the community to do it. I was looking at the thread about wolf detection and it seems like people here are no strangers to image classification. A little overwhelming to be quite honest 😂

While it would be incredible to have a powerful model that was capable of auto-classifying everything right away and storing all the detected creatures & correlated sensor data straight into a database - I wonder if in remote cases where power (and therefore cpu bandwidth), data storage, and network connectivity is at a premium if it would be more valuable to just be able to highlight moments of interest for lab analysis later? OR if you do you have cellular connection, you could download just those moments of interest and not hours and hours of footage? 

Am working on similar AI challenge at the moment. Hoping to translate my workflow to wolves in future if needed. 

We all are little overstretched but it there is no pressing deadlines, it should be possible to explore building efficient model for object detection and looking at suitable hardware for running these model on the edge. 

 

 

Wow this is amazing! This is how we integrate Biology and Information Technology. 

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discussion

July Geospatial Café Q&A

A couple of weeks ago, @ahmedjunaid, @VAR1 and I (with support from @alexrood) hosted the second Geospatial Café and had the pleasure of welcoming speakers who covered topics...

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  • I have question. As Dr Muhammad Rais mentioned ArcGis and QGIS for spatial analysis, map creating etc. If we can also done these analysis with python such as spatial analysis etc and sp, sf function in R for spatial analysis. So why everyone recommend ArcGis. And 2nd question about map of life. Can we download data from that for spatial analysis or habitat modeling. 
  • Lovely to hear your work curating the Map of life @eliseb227. When uploading shapefiles, is it accurate to create a list of exhaustive species identified within a landscape which could see incidents of conflict. can we include community knowledge in this list?

Good question. Not sure everyone recommends ArcGIS anymore, but it is commonly used as a desktop GIS. However, it's not free. QGIS, R, and various Python packages are free. But you just need to know how to code to use them. In fact, using R and Python is often cleaner, faster, and puts you in touch with the data and how it's analyzed, much better than the 'clicky clicky' used in desktop packages. Most will use both desktop and code in the workflows. Among others, please see geemap.org, leafmap.org, and FOS geospatial tools for resources to get started and for a deeper dive. Additionally, please see the articles and discussions in this group.

 

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discussion

WILDLABS AWARDS 2024 - Innovative Sensor Technologies for Sustainable Coexistence: Advancing Crocodilian Conservation and Ecosystem Monitoring in Costa Rica

Hi everyone, it’s time I introduce our project titled “Innovative Sensor Technologies for Sustainable Coexistence: Advancing Crocodilian Conservation and Ecosystem Monitoring...

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Super interesting! I'm currently developing sensor accelerometers for fence perimeters in wildlife conservation centres. I think this is a really cool application of accelerometers; I would love to know how the sensor which you developed for part 3 looked like, or what type of software/machine learning methods you've used? Currently my design is a cased raspberry pi pico, combined with an accelerometer and ml decision trees in order to create a low-cost design. Perhaps there is something to be learnt from this project as well :)

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discussion

Seeking Input: GPS Fix Interval Methodology for Wildlife Tracking Collars

Hi Wildlabs community,I'm hoping that I can gather some input from people here on a technical challenge I've been facing with wildlife tracking collars. Specifically, I'm trying...

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Hi Marlene.

One possibility might be to use the GPS time to synchronize an on-board real time clock (RTC). This configuration would be a "GPS disciplined clock" where the GPS would be used to adjust the time, but the actual timekeeping happens on the real time clock. This would eliminate the drift since the interval would come from an alarm or timer from the offline RTC and would hence continue to work in areas like a den or in dense foliage where it would be difficult to get a GPS fix. 

Thank you.  A couple of things I've done in getting a completely different GPS logging system running.

I do use a local clock to keep local time when the GPS is off.  Each time the GPS comes on and finally gets a fix, I reset the local clock.  The alarm function is then based off of the local clock rather than the GPS.  At least for the chipset I use, the local clock remains running even when in sleep or power down mode and draws very little power.  

Another way you might attack the problem if so you want 1 hour fixes, is to set the alarm for 50 minutes, leaving the GPS on just long enough to get a clock fix and then sleep for the calculated time it takes to get the on-the-hour fix.  I've found that with GPS modules with memory backup (usually a supercap or second small battery), the second fix will be pretty quick, so although there is more power consumption, it's not double what a single fix would be.

Anyway, it's an interesting problem.  Let us know how you elect to address it.

 

Chris H

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article

Leveraging AI & Big Data For Love Of The Environment

🔥 Excited to join the WILDLAB community! I’m Robert Chonge — a Full Stack Developer with a passion for AI and Big Data, now channeling that tech firepower toward environmental conservation.Let’s turn data into action...

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@RobertChonge , I'm into front-end development, UX, Design, and AI as well. Is there any projects you have going that we could collobrate on?
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discussion

Counting aggregated animals in orthomosaics?

Hello everyone!Just wanted to share two papers that we published recently on approaches to deal with counting errors when surveying wildlife populations using drone-derived...

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Thank you for sharing. Would love to learn bit more about the data workflow. 

Last year I tired to using QGIS and few existing models to count the birds from orthomosaics of wadding birds in Cambodia but gave after dismal results. 

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discussion

Issue with SongBeam recorder

Hello everyone, I am currently working on a project to measure the impact of industrial noise on the biodiversity of a natural reserve in Veracruz, Mexico. I have been...

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Hi Josept! Thank you for sharing your experience! This types of feedback are important for the community to know about when choosing what tech to use for their work. Would you be interested in sharing a review of Songbeam and the Audiomoth on The Inventory, our wiki-style database of conservation tech tools, R&D projects, and organizations? You can learn more here about how to leave reviews!

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discussion

Analyzing Bird Song

When I go out and work on building trails in my woodlot here in New Brunswick Canada, I usually have my phone hanging from a branch with Merlin running. Amazing the number of...

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Hi John,

You can try upload it to BirdNEt or try using BirdNET GUI

I believe BirdNET's native classifier is already good enough for the majority of north american birds.
 

Another option you can try is HawkEars, which is a classifier made particularly for Canadian birds. Unlike BirdNET, it doesn't have a graphical interface, though.

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