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Acoustic monitoring is one of our biggest and most active groups, with members collecting, analysing, and interpreting acoustic data from across species, ecosystems, and applications, from animal vocalizations to sounds from our natural and built environment

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Peruvian Bird Audio Dataset Questions

Hello everyone! I am part of a team on developing CNNs to detect species in the Peruvian Amazon from soundscapes. We are having trouble finding a ground truth dataset for the...

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Also tagging @NickGardner who works on a similar project! (detecting birds from audio in Peruvian flooded forests)

Interesting! 

Hi Sean, sounds like an excellent project. Definitely talk with the Arbimon folks! As @carlybatist said, I am working with birds in the Peruvian Amazon, but in Loreto. Definitely would like to hear more about your project. As for this labelling issue here, definitely looks like an error. I have not used this dataset, now I'm curious.  To be honest, some questionable labelling in that file in general. Bounding boxes can be very subjective... 

Hi Sean!

 

I was the one who annotated these recordings and this is definitely a mistake- that song is a Hauxwell's Thrush; it's annotated correctly with 15622 but not with 15616 (that's the same species as 15620). I'm currently in the field and don't have the ability to fix it right now, but should be able to later this month. If you have more of these, please send them to me (wah63@cornell.edu) and I'll correct any errors and upload a version 2. Same for you @NickGardner - I'm very happy to chat about any labeling decisions and correct mistakes or inconsistencies where applicable. Some were intentional/tossup decisions because of the subjective nature of manual bounding boxes, as you note, and some of them are obvious mistakes like the example Sean found, which can happen for a ton of reasons, despite my efforts to reduce or eliminate them. For context, I did the data collection, annotation, etc of this project essentially by myself when I was an undergrad, and so I guarantee there are some other similar errors in there, and, well, there is a reason that there haven't been many similar datasets made in this system! Especially at the time I did these (2019), there just wasn't an established standard for many of these decisions, and I just did the best I could. My main goal was just getting *something* from these systems out there, fully transparent and free, so that people like you could have more to work with. Ironically, these sort of human errors are exactly why the tools you're working on are so important, even though the fear of committing them probably contributes to the scarcity of similar datasets. Hopefully we will eventually be able to eliminate this kind of thing with better automated processes, but in the meantime, yes, please send me everything you found and we can correct them.

 

Thanks so much for using my dataset and looking at it closely enough to find mistakes - together we can make it better and more useful for future users :)

 

Best,

 

Alec

 

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discussion

Problems trying to download raw recordings from Arbimon backup

Has anyone here successfully downloaded raw recordings from Arbimon backup using the script they provide?I tried many times to follow the instructions on the link but repeatedly...

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@calyptura Try using another version of the download scripts that you can download from this link. There are 2 version of the script available.

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discussion

Any users of the BirdWeather device?

Hi everyone, Does anyone have any experience using the BirdWeather acoustic recorder/platform (https://www.birdweather.com)? They seem to have a price point similar to an...

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I have one installed in my yard (check in the link)

It is an autonomous sound recorder, but focused on real-time a.i. bird identification using BirdNet and they still need to have a connection to the internet to work properly. You can use it in the field without the internet, but as soon it connects to the internet again it is going to upload the recordings on their cloud to be identified. It gets a lot of species right, but, at least with Brazilian birds, there is also a lot of errors. 

It also can't be programmed to record as an audiomoth or WildLife Acoustics recorders. For example 1 minute of recording every 10 minute.

I don't know if I helped, but if you have any specific questions I can try to answer them.

Best,

Luciano

 

    

 

 

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discussion

WILDLABS AWARDS 2024 - FinDrop: Accessible Acoustic Monitoring for Mesophotic Marine Environments

Hello everyone! I am honored to introduce our interdisciplinary team, which has experienced exponential growth over the past year, comprising individuals such as @...

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This opportunity is what got me started in deep reef fishes! The grant is for predoctoral students and is due September 30, 2024!! Happy to help or collaborate with anyone interested :)



Eligibility: STRI seeks a diversity of applicants and encourages students from institutions throughout the neotropics to apply. Awards are based upon merit, without regard to race, color, religion, sex, national origin, citizenship, age or condition of handicap of the applicant.

Really great project @MattyD797 and team. Looking forward to seeing your progress. What is the target price of the FinDrop?

Hey Xavier! 

Thank you for your interest and question!! 

The overarching goal of the FinDrop v1 for the WildLabs award is to characterize an instrument and make it as, if not more, sensitive than a ST600 Ocean acoustic instrument at a fraction of the price. While I can’t at this stage provide an accurate estimate of final price, it will be a substantial price decrease over an ST600 while providing the same duration and depth expectations. That decrease in price does exponentially decrease with the number we can expect to sell/interest and may increase with additional features the beta testers suggest. 

This award only gets us to the actual building of the prototype v1 by December, but we are already scheduled to have a completed product v2 built by March/April through additional collaborations that will be manufactured and sold through Sexton Underwater Housing Co. 

Please let me know if you have any other questions!  

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discussion

Sound localized my first poachers today

Using my project sbts-aru. I have a test network of recorders here in the Netherlands with collaborators. At 22:15, around one hour after sunset, so definately dark. Two shots...

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The main takeaway from this particular localization was that a gunshot was able to be detected considerably further than I previously thought. 2.7km is really far I think for a shotgun in normal built up environment.

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discussion

Audiomoth configuration for new users

Hi everyone. I'm new to ecoacoustics and have bought some AudioMoths for monitoring wildlife on the nature reserve I work on. Could anyone recommend some settings for monitoring...

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Hi Nick,

Agree with all of Carly's suggestions and the guide provided. You can expect 20GB of data within a relatively short survey period if you don't use triggers. However, I've found the audiomoth triggers can miss detections, especially for some UK bat species which can be quiet/have low frequency signals.

There's some interesting reading in the acoustic survey methods guidelines. There's plenty of international research to get some further background on. You can also read a summary report of some Scottish woodland monitoring we conducted a couple of years ago - link at the bottom of this web page

Best of luck!

Stefan

also pinging @Giu.Appel who may have additional insights for bat sampling :) 

Hi Nick,

Yes, It's very common to have big data in the SD cards when recording bats!

I agree with Carly's comments. Indeed, I suggest you make a schedule so you do not record continuously overnight. As Stefan says, the trigger can lose some important bat species, so you need to inform which possible bat species can occur in your area - be careful with the triggering settings. 

If you reduce the sample rate (kHz) to 250 kHz, you can also reduce the space on SD cards. I don't know much about the UK bat species, but the 250 kHz sample rate is probably capable of recording all the frequency ranges of UK species.

I'm available if you have more questions, and good luck with the recordings!

 

Best,

 

 

 

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discussion

Seeking insights for the next WILDLABS Virtual Meetup Series

The WILDLABS team is planning the fifth season of virtual meetups as part of our bioacoustics horizon scan. This season, we aim to bring together experts from diverse sectors—...

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So excited for this! 

These topics are all super relevant and comprehensive. Maybe one thing that might be interesting to hear about is projects where PAM is combined with other conservation technologies (camera-traps, eDNA, satellite imagery) - in the context of what PAM is or perhaps is not best for. 

Another topic that will likely come up within the scope of the first 2 projects is acoustic localization, which I know a number of folks are working on but still has a lot to developed for there to be user-friendly workflows for this. 

It would be great to hear from people working in terrestrial vs. freshwater vs marine spaces - these have always felt silo'd. There are obvious differences in the physics of the medium that mean not everything will translate but I still think there can be better/more effective collaboration across the spaces. 

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discussion

Detection and removing of windy events in wild acoustic recordings

Hello to everyone, I have to clean my dataset of recordings concerning an African penguin colony inhabits the South African coast. In particular, since I have recordings with days...

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Hi Francesca, 

I've been exploring this recently, but haven't found a specific solution yet. Could you advise why these packages you have suggested haven't been successful? We they detecting wind, but were not differentiating the penguin calls?

Thanks, Stefan

Hi Stefan,

Sorry, I'm not sure I fully understand your question.

If you're referring to my first comment, the package I initially tried didn't work with my dataset. The likely reasons are related to how these packages analyze sound. For example, Hard Rain uses threshold values of two simple measures: Power Spectrum Density (amplitude) and Signal-to-Noise Ratio at two frequency bands. This isn't sufficient to classify different wind strengths, from low wind to gusts, while also avoiding the misclassification of penguin calls (which are characterized by low-frequency sounds in the same frequency range as wind) as wind.

The solution we found (refer to my last comment on this post) uses deep learning, specifically Convolutional Neural Networks (CNNs), which can provide a valid approach in environments characterized by complex soundscapes. If you're trying to detect windy events of various intensities, I would suggest using our methodology—it's better to use the transfer learning scenario to achieve higher performance.

All the best,
Francesca

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discussion

Acoustic monitoring: looking to understand its basics

Hi all, i have taken a look at acoustic monitoring but i still cannot quite gasp what it entails. I will be glad to hear from you about it in a simple way so as i can understand...

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I love your learning spirit Loveness!! Keep pushing it.

Hi Loveness, I have some slides from a training course on the basics of acoustic monitoring that I can send you - ping me an email and I'll follow up! 

Hi there Loveness, 

I agree there is a ton to learn with acoustic monitoring! Here's my favorite website for learning the (many) basics! 

Discovery of Sound in the Sea

Have fun learning! - Liz

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discussion

Healthy trees for our firewood

I attended a breakfast and one thing I learned for the first time is that our mothers using dead trees wood for firewood has affected their health especially the nails from the...

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This is really interesting, thank you for sharing this knowledge

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discussion

Volunteering in Bioacoustics

Hi everyone! I have just joined Wildlabs and I am deeply passionate about bioacoustics and biodiversity conservation. I have been following various impactful work in the field...

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article

Listen to the Future: A Bioacoustics Horizon Scan

We are thrilled to introduce our new horizon scan, which will chart the future of bioacoustics. By collectively prioritizing emerging innovations that could transform the field, we aim to build consensus, facilitate...

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Super excited to be in involved in this and can't wait to see what comes of it!!
We are looking forward to hear your ideas for reaching new sonic frontiers!! Use the google form on the article.
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funding

Scientific Product Grant

Wildlife Acoustics Scientific Product Grant was introduced to support the advancement of habitat monitoring, and environmental conservation.

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discussion

Auto ID Software for NA Amphibians?

Hi All!So I'm currently running 4 Wildlife Acoustic Song Meter MiniBats at my beaver research and control sites as a means to measure species richness. 2 units at each site, one...

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Hi Cortney,

I recommend exploring the tools developed by Kitzes Lab, such as OpenSoundscape, which can be used for the automatic detection of anurans. Here's a reference paper that might be useful. You might also consider reaching out directly to Justin Kitzes @jkitzes  for more specialized advice.
Also here is a another paper that use BirdNet to automatically detect the bullfrog presence.
Best of luck with your analyses!

Retweet on OpenSoundscape - great package and documentation that allows you to build your own CNNs! Note that this is in Python though. 

There are tons of bioacoustics software and packages in @tessa_rhinehart 's helpful list too! Some more recent options that I don't think are on that yet are Whombat and gibbonNetR (which uses the 'Torch for R' ecosystem). 

Also, Raven has template- and energy-based detectors you could try as well. The monitoR and warbleR packages allow you to do template-based detections too. BirdNET is integrated into Raven now as well.

You can also try Kaleidoscope's native clustering function.

Agree with you that there's definitely not enough resources for frog detection though! I'm assuming the Australian one you found is FrogID? There is also AnuraSet, but this is for neotropical frogs.  

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