Group

Data management and processing tools / Feed

Conservation tech work doesn't stop after data is collected in the field. Equally as important to success is navigating data management and processing tools. For the many community members who deal with enormous datasets, this group will be an invaluable resource to trade advice, discuss workflows and tools, and share what works for you.

discussion

Tracking Individual Whales in 360-degree Videos

Hi WILDLABS Community,My colleagues and I are currently using Insta360 cameras to gather underwater video footage of beluga whales in the Churchill River estuary (Canada). While...

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Hey Courtney! I've just sent you an email about coming on Variety Hour to talk about your work :) Looking forward to hearing from you!

Have you tried using Insta360's DeepTrack feature on your Studio desktop app?  We have used it for similar use cases and it worked well. I would love to hear if it works for your science objectives. We are also experimenting and would love to know your thoughts. :) https://youtu.be/z8WKtdPCL_E?t=123

Hi @CourtneyShuert 

 

We support NOAA with AI for individual ID for belugas (but from aerial and from lateral surface too). If some of our techniques can be cross-applied please reach out: jason at wildme dot org

 

Cheers,

Jason

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discussion

Free online tool to analyze wildlife images

Hey everyone!We made a free online tool to find animals on single images.Link is here: https://www.animaldetect.com/wildlife-detectorIt works very simple: drop an image -> get...

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Hello Eugene, I just tried your service:


Was wondering how possible will it be to have the option to upload a second image and have a comparison running to let the user know if body patterns are: 'same' or 'different', helping to identify individuals. 

Thanks and kind regards from Colombia,
Alejo

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Link

Article on nature data evaluation from Cecil

Really liked this article on dataset evaluation and how we can move towards a more standardized and inter-operable nature data space.

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discussion

How do you tackle the anomalous data during the COVID period when doing analysis?

COVID, as devastating as it for humans, significantly reduced anthropogenic pressures in all ecological systems since they were confined to their homes. My question is as the...

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To clarify, are you talking about a model that carries out automated detection of vocalizations? or a model that detects specific patterns of behavior/movement? I would suspect that the former is not something that may be impacted while training as the fundamental vocalizations/input is not going to change drastically (although see Derryberry et al., where they show variation in spectral characteristics of sparrows at short distance pre and post-covid lockdowns). 

I'm specifically referring to movement of animals affected by anthropogenic factors. My question has nothing to do with vocalisations. 

Humans were essentially removed from large sections of the world during covid and that surely had some effects on wildlife movements, or at least I am assuming it did. But that would not be the regular "trend". If I try to predict the movement of a species over an area frequented by humans, that surely comes into the picture - and so does their absence. 

My question is very specific to dealing with data that has absence (or limited interference) of humans during the covid period in all habitats.

You could just throw out that data, but I think you'd be doing yourself a disservice and missing out on some interesting insights. Are you training the AI with just pre-COVID animal movement data or are you including context on anthropogenic factors as well? Not sure if you are looking at an area that has available visitor/human population data, but if you include that with animal movement data across all years it should net out in the end.

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discussion

Behavioral logging from video

Hi everyone.  I wanted to ask if anyone has found a tool that they'd recommend for logging/coding behavior from video.  I've used BORIS and do like that (and it's free...

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Hi Kyler,

Did you find anything suitable?

Best,

Melissa

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discussion

Jupyter Notebook: Aquatic Computer Vision

Dive Into Underwater Computer Vision Exploration OceanLabs Seychelles is excited to share a Jupyter notebook tailored for those intrigued by the...

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This definitely seems like the community to do it. I was looking at the thread about wolf detection and it seems like people here are no strangers to image classification. A little overwhelming to be quite honest 😂

While it would be incredible to have a powerful model that was capable of auto-classifying everything right away and storing all the detected creatures & correlated sensor data straight into a database - I wonder if in remote cases where power (and therefore cpu bandwidth), data storage, and network connectivity is at a premium if it would be more valuable to just be able to highlight moments of interest for lab analysis later? OR if you do you have cellular connection, you could download just those moments of interest and not hours and hours of footage? 

Am working on similar AI challenge at the moment. Hoping to translate my workflow to wolves in future if needed. 

We all are little overstretched but it there is no pressing deadlines, it should be possible to explore building efficient model for object detection and looking at suitable hardware for running these model on the edge. 

 

 

Wow this is amazing! This is how we integrate Biology and Information Technology. 

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discussion

What Can Camera Traps Data Tell Us? (Besides the Obvious)

Hi everyone,We all know camera traps are great at telling us what species showed up, where and when—and sometimes even temperature data. But is that all we’re...

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A related publication that might be of interest, with the Norwegian Arctic Fox monitoring program we used camera trap time series to study phenological plasticity in arctic fox moulting, specifically the transition from winter to summer coat. We were looking at how this process responds to environmental variation, such as the length of the snow season and temperature fluctuations (e.g., colder years with prolonged snow cover vs. earlier snowmelt and warmer winters). This builds on similar ideas of extracting phenological and climatic insights from camera trap data. :)

Here's a link to the publication "A camera trap-based assessment of climate-driven phenotypic plasticity of seasonal moulting in an endangered carnivore" https://doi.org/10.1002/rse2.304

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course

Drone Photogrammetry & GIS Advanced Course

Sean Hill and 1 more
Follow on from the GeoWing Academy Intermediate Course. It is important to have completed the Intermediate Course before doing the Advanced Course. This course will teach you how to automate the multi-step and complex...

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course

Drone Photogrammetry & GIS Intermediate Course

Sean Hill and 1 more
The Intermediate Course follows on from the GeoWing Academy Foundation Course and is the second instalment of the GeoWing Academy Keystone courses. Here we learn how to isolate plants, analyse plant health and use 3D...

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discussion

ICCB 2025 – Let’s Connect!

Hi Everyone,I’m excited to be attending my first ICCB 2025 as a student presenter and early-career researcher! My work sits at the intersection of computational epidemiology and...

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Hey Stephanie, 

I have dropped you couple of links. I believe we also have a booth somewhere. 

 

Hi Stephanie,

It’s great to hear about your exciting work and that you’ll be attending ICCB 2025 — congratulations on presenting!

The Savannah Tracking team is participating at the exhibition, and we’d love for you to stop by our booth 15.

Given your previous interest in collaring domestic dogs and collecting high-resolution GPS data, it might be a great opportunity for us to connect in person and dive deeper into how our lightweight collar solutions — like those currently deployed on Dingoes — could support your project. We'd be happy to show you how our satellite-enabled collars work, demo our data platforms, and explore a potential fit for your needs.

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discussion

Prototype for exploring camera trap data

Hi, I would like to start a discussion around a prototype that aims at improving consumption of camera trap data. How is it different (in theory) from existing tools? I...

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@Jeremy_ For the Python implementation of basic occupancy models (as suggested by @ollie_wearn ), please refer to these two projects:

I second @martijnB suggestion to use spatially explicit occupancy models (as implemented in R, e.g., https://doserlab.com/files/spoccupancy-web/). However, this would need to be added to both of the aforementioned Python projects.

Lively and informative discussion, I would very much like to contribute if there is some active development work with regards to this. 
I have recent experience with using Model Context Protocol (MCP) to integrate various tools & data repositories with LLMs like Claude. I believe this could be a good idea/path whereby we can do the following:
1. use the images & labels along with any meta-data, chunk/index/store it in vector db
2. integrate with existing data sources available by exposing the data through MCP server

3. Use MCP friendly LLM clients (like Claude) to query, visualize and do other open-ended things leveraging the power of LLM and camera trap data from various sources. 
 

Regards,

Ajay

Hi Jeremy,

I am copying here a reply from Juliane Röder, who is not on the forum here:

 

The GFBio VAT tool seems to do all the desired analysing and visualising stuff - but it isn't specialized on camera trap data. Instead, it harvests GBIF, GFBio data centers, and environmental data that you can combine in any way you want: https://vat.gfbio.org/#/

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Documentation with some example code and notebooks is here: https://docs.vat.gfbio.org

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A standalone tool for camarea trap data and images is nice, but maybe joining forces and adding some functionality to the VAT tool to better handle camera trap data would be a more sustainable solution...?

The VAT tool can give you some simple statistics of the chosen data (e.g. occurences of wild cats in central Europe in winters 2000-2015), and some simple analyses (wild cat occurences and snow depth). It's focus is on geospatial analyses of occurrence data. They do not have any functionality specific for camera trap data - yet.

My point was, that if you want geospatial analyses and/or additional data to compare to camera trap data, you probably don't have to build a new tool.

I'm not involved with the development of the VAT tool, but I could help with the contact. I know the VAT team.

You can contact her on juliane.roeder@uni-marburg.de.

I did a quick exploration of the VAT tool. It is built quite differently, and my first impression is that it is less accessible; however, as you become more familiar with it, you discover a wide range of options to explore for DwcA occurrences.

I believe it is extremely valuable to also have a tool that works directly with the richest data (Camtrap DP), rather than relying on translated data (Darwin Core), where important details and data structure are lost.

I also think the goals of both tools are different: map-based analysis vs. exploration.

But still usefull to get to know about each other :-)


 

 

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discussion

WILDLABS AWARDS 2025 - Trapper Keeper - a scalable and energy-efficient open-source camera trap data infrastructure

With the support of the WILDLABS Awards and Arm, we are about to launch Trapper Keeper, an open-source, AI-powered infrastructure for next-generation camera trap...

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I'm excited to see this project begin; I think its focus on versatility and functionality for users in diverse environments will allow Trapper Keeper to have a broad impact, organically!
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discussion

Apply for Free Access to Nature FIRST Conference (innovative solutions for biodiversity monitoring and human-wildlife coexistence)

The European project Nature FIRST is hosting its final conference at Ouwehands Dierenpark in the Netherlands on 25–26 June 2025, and we’re looking to expand our...

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Nice!

Thought I'd mention that Wildlife Security Innovations will have a booth there, demonstrating our new multi-camera, local AI camera trap that supports miniature high resolution thermal modules. I will be bringing these along.

Hi

This is great! 

So just to double check - there is no way to join online? I would love to be part of this conference. 

Thanks, Els van Lavieren

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